References and Other Phylogenetic Trees
of Prokaryotes
:
Cometary
Panspermia Hypothesis .
http://ijs.sgmjournals.org/content/61/6/1442
http://www.nature.com/nature/journal/v469/n7328/extref/nature09649-s1.pdf
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1610327/
http://www.biomedcentral.com/1471-2148/4/44
ttp://www.biomedcentral.com/1471-2148/4/44/figure/F3
http://www.bergeys.org/outlines/bergeys_vol_4_roadmap_outline.pdf
http://www.ncbi.nlm.nih.gov/pubmed/21206044
http://www.frontiersin.org/Evolutionary_and_Genomic_Microbiology/10.3389/fmicb.2012.00327/abstract
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC427773/
The Chimeric Genome of Sphaerochaeta: Nonspiral Spirochetes That Break with
the Prevalent Dogma in Spirochete Biology
Genome Networks Root the Tree of Life between Prokaryotic Domains
On the chimeric nature, thermophilic origin, and phylogenetic placement
of the Thermotogales.
Spirochaeta
coccoides sp. nov., a Novel Coccoid Spirochete from the Hindgut of the
Termite Neotermes castaneu
Single-cell analysis reveals a novel uncultivated magnetotactic bacterium
within the candidate division OP3
Evolutionary relationships of Fusobacterium nucleatum based on phylogenetic
analysis and comparative genomics.
Genome Sequence
of Fusobacterium nucleatum Subspecies Polymorphum — a
Genetically Tractable Fusobacterium
Genome Sequence and Analysis of the Oral Bacterium Fusobacterium nucleatum
Strain ATCC 25586
W. Ford Doolittle and Olga Zhaxybayeva: On the origin of prokaryotic species,
Genome Research 2009, 19:744-56.
Genes for the Major Structural Components of Thermotogales Species' Togas
Revealed by Proteomic and Evolutionary Analyses of OmpA and OmpB Homologs.
Complete Genome Sequence of the Thermophilic, Piezophilic, Heterotrophic
Bacterium Marinitoga piezophila KA3
Phylogenetic Framework and Molecular Signatures for the Main Clades of the
Phylum Actinobacteria
Long-Term Sustainability of a High-Energy, Low-Diversity Crustal Biome
Protein based molecular markers provide reliable means to understand prokaryotic
phylogeny and support Darwinian mode of evolution
Origin of
the cell nucleus, mitosis and sex: roles of intracellular coevolution
Horizontal gene transfer from extinct and extant lineages: biological innovation
and the coral of life.
Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth
Rubrobacter taiwanensis sp. nov., a novel thermophilic, radiation-resistant
species isolated from hot springs
Genomics of Actinobacteria:
Tracing the Evolutionary History of an Ancient Phylum†
Phylogenetic
and physiological characterization of a filamentous anoxygenic photoautotrophic
bacterium ‘Candidatus Chlorothrix halophila’ gen.
nov., sp. nov., recovered from hypersaline microbial mats
Armatimonas rosea gen. nov., sp. nov., of a novel bacterial phylum, Armatimonadetes
phyl. nov., formally called the candidate phylum OP10
Origin and Spread of Photosynthesis Based upon Conserved Sequence Features
in Key Bacteriochlorophyll Biosynthesis Proteins.
Nucleotide Sequence of the Gene Coding for the Nitrogenase Iron Protein
from Klebsiella pneurnoniae*
Cloning, expression, purification, crystallization and preliminary crystallographic
analysis of NifH1 from Methanocaldococcus jannaschii
Cloning, expression, purification, crystallization and preliminary crystallographic
analysis of NifH2 from Methanocaldococcus jannaschii.
Expression and association of group IV nitrogenase NifD and NifH homologs
in the non-nitrogen-fixing archaeon Methanocaldococcus jannaschii.
A novel immunity system for bacterial nucleic acid degrading toxins and
its recruitment in various eukaryotic and DNA viral systems
C.
Desnues et al., “Provirophages and transpovirons as the diverse
mobilome of giant viruses,” Proceedings of the National Academy of
Sciences, doi:10.1073/pnas.1208835109, 2012.
Structural and replicative diversity of large plasmids from sphingomonads
that degrade polycyclic aromatic compounds and xenobiotics.
Protein Repeats: Structures, Functions, and Evolution
The Emergence and Early Evolution of Biological Carbon-Fixation
Archaeal Lipids: Biosynthesis
Genome sequence of Haloplasma contractile, an unusual contractile bacterium
from
2 a deep-sea anoxic brine lake
Revised Road Map to the Phylum Firmicutes
Conservation of the S10-spc-alpha locus within otherwise highly plastic
genomes provides phylogenetic insight into the genus Leptospira.
Complete Nucleotide Sequence of the LE1 Prophage from the Spirochete
Leptospira biflexa and Characterization of Its Replication and Partition
Functions
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