{"id":2216,"date":"2014-10-08T22:07:50","date_gmt":"2014-10-09T05:07:50","guid":{"rendered":"https:\/\/www.telemedical.com\/wordpress\/?page_id=2216"},"modified":"2020-09-30T13:06:50","modified_gmt":"2020-09-30T20:06:50","slug":"archaea-viruses","status":"publish","type":"page","link":"https:\/\/www.telemedical.com\/wordpress\/books\/origin-of-life-an-astrobiological-synthesis-of-physics-molecular-biology-and-geobiology\/the-physics-and-biochemistry-of-life\/archaea-viruses\/","title":{"rendered":"Archaea Viruses"},"content":{"rendered":"

1. Jelly roll capsids evolved from single to double beta barrels. \u00a0Gamma Sphaerolipoviruses in Archaea\/Eubacteria and ( Microviridae – \u00a0ssDNA in eubacteria<\/a>\/archaea\u00a0\u00a0)\u00a0have single jelly roll \u00a0while Tectiviridae have double jelly roles.<\/p>\n

2. PolB and Cas1 casposons are related to Polintoviruses and may be responsible for the evolution of the CRISPR CAS adaptive immunity in Archaea and Bacteria<\/p>\n

3. PolA and Cas4 transposons may be related to rudiviridae \u00a0and ssDNA Innoviruses. Also related to poxviruses, chlorella virus, and african swine fever virus.<\/p>\n

4. Cas9 containing transposons may give rise to \u00a0another class of viruses.<\/p>\n

5. Insertion sequences may \u00a0evolve into plasmids and then acquiring envelopes or capsids to become viruses.<\/p>\n

6. Pre LUCA cells may have evolved into HK97 and jelly roll capsid based viruses containing PolA, PolB, and PolC dna polymerases (ie. the caudiviralis and microviridae-tectoviridae ) via reductions in their genomes.<\/p>\n

Protein primed DNA polymerase B family – ampullaviridae, fuselloviridae, & pleolipoviridae are archaeal viruses while casposons<\/a> are\u00a0 dna transposons.\"1741-7007-12-36-3\"<\/a><\/p>\n

Globuloviridae – PSV<\/a>1, TTSV1 –\u00a0 linear dsDNA<\/a><\/p>\n

PortoGlobuloviridae<\/a> – SPV1 circular dsDNA<\/p>\n

Metallosphaera Turreted Icosahedral Viridae<\/a> – MTIV1, MTIV2 –\u00a0 linear dsDNA<\/p>\n

Methanosarcina Spherical Virus<\/a> – MetSV\u00a0 lipid containing,\u00a0 linear dsDNA<\/p>\n

Clavaviridae -APBV1<\/a>\u00a0major viral protein with blast similarity to myovirus tail proteins<\/p>\n

Caudiviralis – Archaeal<\/a>\u00a0tailed viruses with (HK-97 capsid protein fold)<\/p>\n

Myo –\u00a0PhiH-like =\u00a0Halobacterium<\/em> phage \u03d5H,\u00a0Halobacterium<\/em> phage Hs1, (HF2\u00a0, \u00a0HF1, HRTV-5, and HRTV-8) (HRTV-7 and HSTV-2),\u00a0HGTV-1<\/p>\n

Sipho – (HCTV-1, HCTV-5, and HVTV-1) , (HCTV-2 and HHTV-2),\u00a0 HHTV-1 ,\u00a0HRTV-4 and BJ1,\u00a0\u03d5Ch1, Nvie-Pro1 provirus in thaumarchaea : possibly myo<\/a><\/p>\n

Podo –\u00a0HSTV-1<\/p>\n

TECTIVIRIDAE -with beta barrel\/jelly roll \u00a0folds<\/p>\n

Sphaerolipoviruses =\u00a0Halosphaeroviruses<\/a> – PH1<\/a>, SH1, HHIV2, SNJ1 -jelly roll capsid<\/p>\n

Alpha HHIV-2, PH1, SH1<\/a><\/p>\n

Beta SNJ1<\/a><\/p>\n

Gamma (Thermus bacterial\u00a0IN93<\/a>,\u00a0<\/i>P23-65H<\/a>,\u00a0<\/i>P23-72<\/a>\u00a0<\/i>P23-77<\/a>) and\u00a0provirus ArcVen-P3 from Archaeoglobus veneficus<\/em>SNP6<\/a>\u00a0and provirus in choroflexi -dehallococcoides<\/a><\/i><\/p>\n

Turriviridae -jelly roll capsid<\/p>\n

alpha – STIV1<\/a>, STIV2<\/p>\n

TKV4 and MVV<\/a><\/p>\n

Pleolipoviridae<\/a><\/p>\n

I – \u00a0HHPV1, HRPV-6, HRPV-2, HRPV-1ssDNA<\/p>\n

II – HRPV-3, HGPV-1<\/p>\n

III – HIS2<\/p>\n

Guttaviridae<\/p>\n

alpha<\/a>\u00a0– ? SNDV<\/p>\n

beta<\/a>\u00a0– APOV1<\/p>\n

CAS4 like Major Coat Protein Viruses<\/p>\n

Tristomaviridae<\/a><\/p>\n

Ligamenviralis<\/p>\n

Rudiviridae – SIRV1-2<\/a>, SRV, ARV1, SMRV1<\/a><\/p>\n

Lipothrixviridae -AFV1-9, SIFV,TTV1<\/p>\n

Ampullaviridae -ABV<\/p>\n

Bicaudaviridae <\/a>–<\/p>\n

alpha – ATV<\/p>\n

beta –\u00a0STSV1, STSV2<\/a><\/p>\n

Fuselloviridae<\/a>\/Monocaudaviruses – \u00a0SMF1<\/a>, SMV1<\/a><\/p>\n

alpha – SSV1-5<\/p>\n

beta – \u00a0ASV1, SSV-6 –<\/p>\n

gamma – APSV1, ?SSV-7<\/p>\n

delta – PAV1, TPV1, A3-VLP<\/p>\n

epsilon – HIS1<\/p>\n

HAV2<\/a>\u00a0(tadpole shaped\/?fuselloviridae )<\/a>\u00a0in hyperthermophiles<\/p>\n

CAS4 and PolA containing viruses<\/a>\u00a0in hyperthermophiles<\/p>\n

HAV1<\/a>\u00a0?rudiviridae<\/p>\n

SpiraVirus -ss circular DNA virus -ACV<\/a><\/p>\n

\"CELLSANDVIRUSES\"<\/a><\/p>\n

References<\/h3>\n
\n

Polintons: a hotbed of eukaryotic virus, transposon and plasmid evolution<\/a>\u00a0Dec 2014<\/h4>\n

Viruses of Haloarchaea .. Sept 2014<\/a><\/h4>\n

Review: The Archeoviruses<\/a>\u00a0June 6 2011<\/h4>\n

Evolutionary continuum between small RNA and DNA Viruses 3\/7\/2014<\/a><\/h4>\n

Viruses of hyperthermophilic Archaea : 2003<\/a><\/h4>\n

Archaeal Virus Database<\/a><\/h4>\n

Adenosine triphosphatases of thermophilic archaeal double-stranded DNA viruses<\/a><\/h4>\n

Morphotypes of virus-like particles in two hydrothermal vent fields on the East Scotia Ridge, Antarctica<\/a><\/h4>\n\n\n

<\/p>\n","protected":false},"excerpt":{"rendered":"

1. Jelly roll capsids evolved from single to double beta barrels. \u00a0Gamma Sphaerolipoviruses in Archaea\/Eubacteria and ( Microviridae – \u00a0ssDNA in eubacteria\/archaea\u00a0\u00a0)\u00a0have single jelly roll \u00a0while Tectiviridae have double jelly roles. 2. PolB and Cas1 casposons are related to Polintoviruses and may be responsible for the evolution of the CRISPR CAS adaptive immunity in Archaea […]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":1363,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-2216","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.telemedical.com\/wordpress\/wp-json\/wp\/v2\/pages\/2216","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.telemedical.com\/wordpress\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.telemedical.com\/wordpress\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.telemedical.com\/wordpress\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.telemedical.com\/wordpress\/wp-json\/wp\/v2\/comments?post=2216"}],"version-history":[{"count":0,"href":"https:\/\/www.telemedical.com\/wordpress\/wp-json\/wp\/v2\/pages\/2216\/revisions"}],"up":[{"embeddable":true,"href":"https:\/\/www.telemedical.com\/wordpress\/wp-json\/wp\/v2\/pages\/1363"}],"wp:attachment":[{"href":"https:\/\/www.telemedical.com\/wordpress\/wp-json\/wp\/v2\/media?parent=2216"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}